geneviewerInteractive gene cluster charts for JavaScript, R and Python

Draw gene clusters, transcripts and genome alignments in the browser with D3

Genes

Arrows, boxes or rounded boxes on a sequence line, coloured by group, with labels and tooltips.

Exons, introns and UTRs for splice variants, with arcs for the junctions between them.

Connections between homologous genes or alignment blocks, shaded by identity, with inversions marked.

Titles, cluster labels, footers and gene labels that move apart, plus text, arrows, promoters and terminators.

Axes, coordinates, scale bars, scale breaks and legends with groups that can be hidden with a click.

Built-in themes and colour palettes for journal figures and slides, or a black and white pattern for each group.

A zoom slider, selection, dragging of labels and titles, undo and redo, and SVG or PNG export.

Reads GenBank, GFF, FASTA and BED files, aligns proteins and genomes, and builds these charts from data frames.

R reference

Load CSV, GenBank and FASTA files and design a chart by point and click. It runs entirely in your browser.

Open the dashboard