Nucleotide alignment of the pQEB1 plasmids

The aligned regions between neighbouring plasmids of pQEB1_plasmids, in the order pQEB1_inv3_Tn5403, pQEB1, pQEB1_inv1, pQEB1_inv1_inv2 and pQEB1_inv1_arsTn, from a one-to-one nucleotide alignment with MUMmer (nucmer, see mummer_alignment()). Regions shorter than 500 bp are left out. Regions with start2 larger than end2 are inverted.

Usage

pQEB1_alignment

Format

A data frame with 14 rows and 9 columns:

• cluster1, cluster2: Names of the two plasmids. Character vectors.
• start1, end1: Start and end of the region in cluster1. Integer vectors.
• start2, end2: Start and end of the region in cluster2. Integer vectors.
• length1, length2: Length of the region in each plasmid. Integer vectors.
• identity: Percentage identity of the region. A numeric vector.

Source

Made by data-raw/pQEB1_plasmids.R.