The genes of five IncN plasmids of the pQEB1 lineage, which carries the
carbapenemase gene blaKPC-2, from a hospital outbreak of Enterobacter
cloacae and Klebsiella oxytoca. The variants differ from pQEB1 by
inversions and transposon insertions. Made by data-raw/pQEB1_plasmids.R
from the GenBank files, together with pQEB1_alignment.
Format
A data frame with 401 rows and 10 columns:
- cluster
Name of the plasmid. A character vector.
- host
Species and strain the plasmid was found in. A character vector.
- accession
GenBank accession of the plasmid. A character vector.
- locus_tag
Locus tag of the gene. A character vector.
- gene
Gene name, or "" when the gene has none. A character vector.
- product
Description of the gene product. A character vector.
- category
Function of the gene from its name and product, e.g. "Carbapenemase (KPC)", "Mobile element" or "Conjugation". A character vector.
- start
Start position of the gene. A numeric vector.
- end
End position of the gene. A numeric vector.
- strand
Strand of the gene, "forward" or "complement". A character vector.