Function reference • geneviewer

All functions

BRCA1_splice_variants: BRCA1 Splice Variants

GC_align(): Align gene clusters

GC_annotation(): Add Annotations to a GC_chart

GC_chart(): Create a GC Chart Visualization

GC_cluster(): Modify Cluster Settings

GC_clusterFooter(): Add a Footer to Each Cluster in a GC Chart

GC_clusterLabel(): Set or Update Cluster Labels for a GC Chart

GC_clusterTitle(): Update cluster Title of a GC Chart Cluster

GC_color(): Update Color Scheme in Gene Chart

GC_coordinates(): Modify Coordinates in a GC Chart

GC_element_style(): Style an Individual Element

GC_events(): Report Chart Interactions and Completed Updates

GC_genes(): Modify Gene Characteristics within a Chart

GC_grid(): Update Grid Display of a GC Chart Cluster

GC_labels(): Add Labels to Each Cluster in a GC Chart

GC_legend(): Set Legend for a Gene Chart

GC_links(): Add Links to GC Chart

GC_normalize(): Normalize Gene Clusters in a Genomic Chart

GC_pattern(): Fill Genes with Patterns

GC_scale(): Update Scale of a GC Chart Cluster

GC_scaleBar(): Update Scale Bar of a GC Chart Cluster

GC_sequence(): Update Sequence Display of a GC Chart Cluster

GC_theme(): Set the Theme of a GC Chart

GC_title(): Add Title to a GC_chart

GC_toolbar(): Set the Toolbar of a GC Chart

GC_tooltip(): Set Tooltip for a Gene Chart

GC_trackMouse(): Track Mouse Movement in a GC_chart

GC_transcript(): Modify Transcript Characteristics within a Chart

GC_zoom(): Add a Zoom Slider to a GC Chart

GC_zoom_to(): Set the Zoom of a GC Chart in Shiny

coronavirus_genomes: Genes of eleven coronaviruses from the four genera

erythromycin_BlastP: Erythromycin BlastP results

erythromycin_cluster: Erythromycin Gene Cluster Data

gbk_features_to_df(): Convert GenBank Features to Data Frame

genbank_to_fasta(): Convert GenBank to FASTA Format

GC_chartOutput() renderGC_chart(): Shiny bindings for geneviewer

geneviewer_palette(): Colours of a geneviewer Palette

geneviewer_theme(): Settings of a Built-in Theme

get_introns(): Calculate Intron Positions Based on Exons

hs_dystrophin_transcripts: Human Dystrophin Transcripts Data

human_hox_genes: Human HOX Gene Cluster Data

mummer_alignment(): Perform Sequence Alignment Using MUMmer

ophA_clusters: ophA Gene Cluster from Omphalotus olearius

pQEB1_alignment: Nucleotide alignment of the pQEB1 plasmids

pQEB1_plasmids: Genes of the blaKPC-2 plasmid pQEB1 and four of its variants

protein_blast(): Perform Protein BLAST Analysis Within Specified Clusters

read_bed(): Read BED Files

read_fasta(): Read Protein Sequences from FASTA Files

read_gbk(): Read Data from GenBank Files

read_gff(): Read GFF Files

tn7_crispr_elements: Genes of Tn7 and of Tn7-like transposons carrying a CRISPR-Cas system