GC.genes()

Set how the genes are drawn.

Usage

chart.genes(
    group,
    marker,
    marker_size,
    show,
    color_scheme,
    custom_colors,
    cluster,
    item_style,
    group_style,
    style_by,
    corner_radius,
    **options,
)

An argument shown without a default is optional too: left out, the chart keeps its default.

chart is a GC chart.

Arguments

Argument	Type	Description
group	str, optional	Column of groups, for the gene colours. Default: the group of the chart.
marker	str, optional	The shape of the genes: "arrow", "boxarrow", "box", "cbox" or "rbox".
marker_size	str, optional	"small", "medium" or "large".
show	bool	Whether to show the genes. Default True.
color_scheme	str, optional	A d3 colour scheme (e.g. "schemeSet2") or a geneviewer palette (e.g. "okabeIto", see geneviewer_palette). Without cluster, the legend uses the same colours.
custom_colors	list or dict, optional	Colours recycled over the groups, or a dict of colours by group; groups left out of a dict keep the colours of the scheme.
cluster	int, str or list, optional	The clusters, by number (from 1) or name. Default: all.
item_style	list of dict	Styles of single genes, e.g. [{"index": 2, "fill": "red"}].
group_style	dict of dict, optional	Styles by group, applied to every gene of that group, e.g. {"promoter": {"marker": "box", "fill": "grey"}}. item_style takes precedence.
style_by	str, optional	The column group_style is matched against, or "geneTrack". Default: group.
corner_radius	float, optional	Radius in pixels of the rounded corners of "arrow", "boxarrow", "box" and "rbox" markers. Default: sharp corners, and 5 for "rbox".
**options		Further gene options, e.g. stroke="black", stroke_width=1, marker_height=12.

Value

GC: The chart.