GC.links()

Add links between genes of neighbouring clusters.

Usage

chart.links(
    group,
    data,
    value1,
    value2,
    cluster,
    curve,
    measure,
    show_links,
    label,
    label_position,
    normal_color,
    inverted_color,
    low_color,
    vmin,
    vmax,
    use_group_colors,
    color_bar,
    color_bar_options,
    link_width,
    link_style,
    label_style,
    **options,
)

An argument shown without a default is optional too: left out, the chart keeps its default.

chart is a GC chart.

Arguments

Argument	Type	Description
group	str, optional	Column matched between clusters: genes with the same value are linked.
data	pandas.DataFrame, optional	Links to draw instead, e.g. from protein_blast().
value1, value2	list, optional	Pairs of group values to link, of the same length: each value of value1 is linked to the value of value2 in the same place. Give both or neither; with neither, genes of the same group are linked.
cluster	list, optional	The clusters to link, at least two. Default: all.
curve	bool, optional	Whether links are curved.
measure	str	"identity", "similarity" or "none": what colours and labels the links. Default "identity".
show_links	bool	Whether to show the links (show in the spec). Default True.
label	bool	Whether to label the links with the measure. Default True.
label_position	str	"gene" or "link". Default "gene".
normal_color, inverted_color, low_color	str, optional	Colours of links, of inverted links, and of low values.
vmin, vmax	float, optional	The range of the measure for the colours.
use_group_colors	bool	Whether links take the colour of their group. Default False.
color_bar	bool, optional	Whether to show a colour bar.
color_bar_options	dict	Options of the colour bar: position, orientation, labels, legendSide.
link_width	float, optional	Width of the links.
link_style, label_style	dict	Styles of the links and their labels.
**options		Further options.

Value

GC: The chart.