GC.transcript()

Draw the data as transcripts: exons, introns and UTRs.

The first call makes the chart again with the transcripts as clusters, and adds an intron between each pair of exons to the data. Settings of the whole chart made before it (title, legend, theme, grid margins) are kept; settings per cluster must come after it.

Usage

chart.transcript(
    transcript,
    type,
    strand,
    group,
    selection,
    show,
    color_scheme,
    custom_colors,
    style_exons,
    style_introns,
    style_utrs,
    item_style_exons,
    item_style_introns,
    item_style_utrs,
    group_style_exons,
    group_style_introns,
    group_style_utrs,
    style_by,
    label_options,
    **options,
)

An argument shown without a default is optional too: left out, the chart keeps its default.

chart is a GC chart.

Arguments

Argument	Type	Description
transcript	str, optional	Column of the transcript of each row. Default "transcript".
type	str, optional	Column of the feature type: "exon", or a UTR ("5_utr", "3_utr").
strand	str, optional	Column of strands, as for GC().
group	str, optional	Column of groups, for the colours. Default: the group of the chart.
selection	int, str or list, optional	The transcripts, by number (from 1) or name. Default: all.
show	bool	Whether to show the transcripts. Default True.
color_scheme, custom_colors		As for genes().
style_exons, style_introns, style_utrs	dict	Styles of all exons, introns or UTRs.
item_style_exons, item_style_introns, item_style_utrs	list of dict	Styles of single exons, introns or UTRs.
group_style_exons, group_style_introns, group_style_utrs	dict of dict	Styles by group, e.g. {"tx1": {"fill": "red"}}.
style_by	str, optional	The column the group styles are matched against. Default: group.
label_options	dict	Options of the transcript labels, e.g. {"fontSize": "12px"}.
**options		Further options.

Value

GC: The chart.