geneviewer
0.3.11GitHub

ophA Gene Cluster from Omphalotus olearius ​

This dataset represents the ophA gene cluster from Omphalotus olearius and Dendrothele bispora, involved in the production of omphalotin, a cyclic N-methylated peptide.

Usage ​

python
from geneviewer import datasets

ophA_clusters = datasets.load("ophA_clusters")

Format ​

A pandas DataFrame with 17 rows and 5 columns:

  • name: Gene names. A character vector.
  • start: Start positions of the genes. An integer vector.
  • end: End positions of the genes. An integer vector.
  • class: Classifications of the genes. A character vector indicating the type of protein or function associated with each gene.
  • cluster: Cluster identification as a character vector, specifying whether the gene belongs to the ophA or dbophA gene cluster.

References ​

van der Velden NS et al. Autocatalytic backbone N-methylation in a family of ribosomal peptide natural products. Nat Chem Biol. 2017 Aug;13(8):833-835. doi: 10.1038/nchembio.2393. Epub 2017 Jun 5. PMID: 28581484.